Index

A

autocorr_fft() (in module mdgo.conductivity)

C

calc_acf() (in module mdgo.residence_time) calc_cond_msd() (in module mdgo.conductivity)

calc_neigh_corr() (in module mdgo.residence_time) choose_msd_fitting_region() (in module mdgo.conductivity) conductivity_calculator() (in module mdgo.conductivity)

D

dsq() (in module mdgo.volume)

E

exponential_func() (in module mdgo.residence_time)

F

fill_volume_matrix() (in module mdgo.volume)

fit_residence_time() (in module mdgo.residence_time)

G

get_beta() (in module mdgo.conductivity) get_dimensions() (in module mdgo.volume) get_max_dimensions() (in module mdgo.volume)

get_occupied_volume() (in module mdgo.volume) get_radii() (in module mdgo.volume) get_unoccupied_volume() (in module mdgo.volume)

M

make_matrix() (in module mdgo.volume) make_packmol_input() (mdgo.mdgopackmol.PackmolWrapper method) mdgo module mdgo.conductivity module mdgo.mdgopackmol module mdgo.msd module mdgo.residence_time module

mdgo.volume module module mdgo mdgo.conductivity mdgo.mdgopackmol mdgo.msd mdgo.residence_time mdgo.volume molecular_volume() (in module mdgo.volume) msd_fft() (in module mdgo.conductivity) msd_from_frags() (in module mdgo.msd)

N

neighbors_one_atom() (in module mdgo.residence_time)

P

PackmolWrapper (class in mdgo.mdgopackmol)

parse_command_line() (in module mdgo.volume) partial_msd() (in module mdgo.msd)

R

round_dimensions() (in module mdgo.volume)

run_packmol() (mdgo.mdgopackmol.PackmolWrapper method)

S

set_max_dimensions() (in module mdgo.volume)

states_coord_array() (in module mdgo.msd)

T

total_msd() (in module mdgo.msd)